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Protein Nitration

Protein nitration involves the addition of a nitro group (–NO₂) to susceptible amino acids, mainly tyrosine (Tyr) and tryptophan (Trp), although most studies focus on tyrosine nitration. Nitration is generally considered irreversible and often impairs protein function, though neutral or positive effects have been reported. Importantly, tyrosine nitration is a selective, non-random process influenced by protein structure and cellular context (e.g., soluble vs. membrane-bound).

Mechanisms of Nitration


Tyrosine and tryptophan nitration mainly occur via peroxynitrite (ONOO⁻) or nitrogen dioxide radicals (•NO₂). Peroxynitrite is rapidly formed from nitric oxide (•NO) and superoxide (O₂•⁻) near sites of superoxide production and is highly reactive at physiological pH. Nitration proceeds indirectly through radical intermediates. Alternatively, •NO₂-mediated nitration can arise from reactions between hydrogen peroxide (H₂O₂) and nitrite (NO₂⁻) in the presence of hemoperoxidases.

Simple model of protein tyrosine and tryptophan nitration via peroxynitrite and nitrogen dioxide
Fig. 1. Simple model of protein tyrosine and tryptophan nitration. Two main nitrating reactions have been proposed to mediate this process: (a) by peroxynitrite (ONOO⁻) which is formed by the quick reaction between nitric oxide (•NO) and superoxide (O₂•⁻) radicals; and (b) by •NO₂ produced through the reaction of hydrogen peroxide (H₂O₂) and nitrite (NO₂⁻) in the presence of hemoperoxidase (from Corpas et al., 2021).

Reversibility and Cellular Fate


For tyrosine nitration to regulate signaling independently of phosphorylation, it must be reversible. Although once considered irreversible, denitration mechanisms have been identified in animals, while in plants no denitrase has yet been confirmed, leaving reversibility uncertain. Alternative outcomes include reduction of nitrotyrosine to aminotyrosine or removal of nitrated proteins via proteasome-mediated degradation. Evidence suggests that nitration often increases protein susceptibility to proteasomal degradation, including in plants.

Functional Effects and Phosphorylation


Functionally, protein tyrosine nitration lowers the pKa of tyrosine, increases hydrophobicity, and can induce structural and steric changes. In plants, nitration generally leads to loss of protein function. For instance, peroxynitrite-associated nitration targets Tyr348 and Tyr360 in pepper catalase inducing its down-regulation which favours for hydrogen peroxide accumulation during ripening (González-Gordo et al., 2024). A further example from pepper is the H₂S-generating cytosolic L-cysteine desulfhydrase, which was reported to be nitrated at Tyr82 and Tyr254, resulting in loss of enzymatic activity in pepper fruits (Muñoz-Vargas et al., 2023). In animals, nitration can either activate, inactivate, or have no effect on protein activity, and functional changes are not always directly caused by tyrosine modification alone.

Tyrosine nitration can also positively or negatively affect tyrosine phosphorylation, thereby influencing cell signaling. While this relationship is well documented in non-plant systems, evidence in plants remains limited. Nonetheless, disruptions in microtubule organization and protein stability suggest a functional interplay between tyrosine nitration and phosphorylation, potentially through competition for the same tyrosine residues (Kolbert et al., 2017).

Fates and consequences of protein tyrosine nitration (PTN): mechanisms and functional outcomes
Fig. 2. Fates and consequences of PTN. Possible mechanisms regulating nitrated protein pool (left) and possible functional, signalling consequences of tyrosine nitration (right). The nitro group in tyrosine residue can be reduced, but neither enzymatic nor non-enzymatic reductants have been identified in plants or in animals. Denitrase activity has been characterized in animals but not in plants consequently the reversibility of tyrosine nitration is still questionable. Formation and accumulation of proteasome-resistant protein aggregates can also be conceivable. Nitrated proteins can be targeted for polyubiquitination and for proteasomal degradation. Nitration may cause structural and consequently functional modifications (inactivation, activation) in proteins. In plants, evidences available for PTN-triggered functional loss or unaffected activity. Moreover, nitration of tyrosine amino acid may interfere with phosphorylation. In plants, the converse regulation of Tyr phosphorylation and nitration has been evidenced which raises the possibility of competition between the two post-translational regulatory processes (from Kolbert et al., 2017).

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References

  • Corpas FJ, González-Gordo S, Palma JM Protein nitration: A connecting bridge between nitric oxide (NO) and plant stress.. Plant Stress 2, 100026 (2021). https://doi.org/10.1016/j.stress.2021.100026
  • Kolbert Zs, Feigl G, Bordé Á, Molnár Á, Erdei L Protein tyrosine nitration in plants: Present knowledge, computational prediction and future perspectives.. Plant Physiology and Biochemistry 113, 56-63 (2017). https://doi.org/10.1016/j.plaphy.2017.01.028
  • Muñoz-Vargas MA, López-Jaramillo J, González-Gordo S, Paradela A, Palma JM, Corpas FJ H2S-generating cytosolic L-cysteine desulfhydrase and mitochondrial D-cysteine desulfhydrase from sweet pepper (Capsicum annuum L.) are regulated during fruit ripening and by nitric oxide.. Antioxidants and Redox Signaling 39(1-3), 2–18 (2023). https://doi.org/10.1089/ars.2022.0222
  • González-Gordo S, López-Jaramillo J, Rodríguez-Ruiz M, Taboada J, Palma JM, Corpas FJ Pepper catalase: a broad analysis of its modulation during fruit ripening and by nitric oxide.. Biochemical Journal 481(13), 883-901 (2024). https://doi.org/10.1042/BCJ20240247